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RNA methylation
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Job:
Postdoctoral position - Molecular Biologist
epigenomics
RNA methylation
RNA dynamics
chromatin
computational biology
Job
6.6 years ago
mattia pelizzola
▴ 200
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Comment: Error running tximeta
by
Michael Love
42k
For how to point tximeta to files, please refer to the vignette which has examples. > These are the file types output by Salmon into each …
Comment: 'path' must be string
by
James W. MacDonald
66k
That's a tough one the `probeAssay` object is made internally, and that step is meant to convert old names. The error arises because the pa…
Comment: 'path' must be string
by
cpierce2
• 0
Sorry for the garbled code. One more thing, again I appreciate it. ``` Error in startsWith(probeAssay[["RTS_ID"]][1L], "RNA") : …
Comment: Error running tximeta
by
daria.igudesman
• 0
Thank you, Michael, If I can follow up with a couple of questions: 1. I did indeed move the quant.sf files. I can move them back into the…
Comment: DGE with a Continuous Variable
by
Michael Love
42k
The fitted counts in mu will work but they contain size factor scaling. So you can divide those by `sizeFactors(dds)`. ``` mu <- assays(dd…
Votes
Comment: DGE with a Continuous Variable
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
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A: Extract sample information from own BAM files using SGSeq
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Michael Love
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